There is a 1/4 inch deep sracth in my door right bellow the door bumber and goes into the rear quarter panal is there any way to pull it out on the door. I dont want to fill it because you will see it when the door is open. I plan on filling the rear quarter.

 

You can try the metal shrinking method, but if you don't already know how, you should leave it to a pro. If you really want to learn how, get a book that covers advanced technics (or search the net) and practice on some scrap sheet metal first.